Dynamic Annotation Materialization Client

dynamicannotationdb.materialization_client module

class dynamicannotationdb.materialization_client.DynamicMaterializationClient(aligned_volume, sql_base_uri)[source]

Bases: dynamicannotationdb.interface.DynamicAnnotationInterface

create_and_attach_seg_table(table_name: str, pcg_table_name: str)[source]
delete_linked_annotation(table_name: str, pcg_table_name: str, annotation_ids: List[int])[source]

Mark annotations by for deletion by list of ids.

Parameters

  • table_name (str) – name of annotation table

  • pcg_table_name (str) – name of chunked graph reference table

  • annotation_ids (List[int]) – list of ids to delete

drop_table(table_name: str) → bool[source]
get_linked_annotations(table_name: str, pcg_table_name: str, annotation_ids: List[int]) → dict[source]

Get list of annotations from database by id.

Parameters

  • table_name (str) – name of annotation table

  • pcg_table_name (str) – name of chunked graph reference table

  • annotation_ids (int) – annotation id

Returns

list of annotation data dicts

Return type

list

get_linked_tables(table_name: str, pcg_table_name: str) → List[source]
insert_linked_annotations(table_name: str, pcg_table_name: str, annotations: List[dict])[source]

Insert annotations by type and schema. Limited to 10,000 annotations. If more consider using a bulk insert script.

Parameters

  • table_name (str) – name of annotation table

  • pcg_table_name (str) – name of chunked graph reference table

  • annotations (dict) – Dictionary of single annotation data.

insert_linked_segmentation(table_name: str, pcg_table_name: str, segmentations: List[dict])[source]

Insert segmentations by linking to annotation ids. Limited to 10,000 segmentations. If more consider using a bulk insert script.

Parameters

  • table_name (str) – name of annotation table

  • pcg_table_name (str) – name of chunked graph reference table

  • segmentations (List[dict]) – List of dictionaries of single segmentation data.

load_table(table_name: str)[source]
property table
update_linked_annotations(table_name: str, pcg_table_name: str, annotation: dict)[source]

Updates an annotation by inserting a new row. The original annotation will refer to the new row with a superceded_id. Does not update inplace.

Parameters

  • table_name (str) – name of annotation table

  • pcg_table_name (str) – name of chunked graph reference table

  • annotation (dict, annotation to update by ID) –